ACNE: Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization

A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).

Version: 0.8.0
Depends: R (≥ 3.0.0), aroma.affymetrix (≥ 2.13.0)
Imports: MASS, R.methodsS3 (≥ 1.7.0), R.oo (≥ 1.18.0), R.utils (≥ 1.34.0), matrixStats (≥ 0.14.0), R.filesets (≥ 2.7.0), aroma.core (≥ 2.13.0)
Suggests: DNAcopy
Published: 2015-02-23
Author: Maria Ortiz [aut], Henrik Bengtsson [aut, cre, cph], Angel Rubio [aut]
Maintainer: Henrik Bengtsson <henrikb at braju.com>
License: LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)]
URL: http://r-forge.r-project.org/projects/snpsprocessing/
NeedsCompilation: no
Materials: NEWS
CRAN checks: ACNE results

Downloads:

Reference manual: ACNE.pdf
Package source: ACNE_0.8.0.tar.gz
Windows binaries: r-devel: ACNE_0.8.0.zip, r-release: ACNE_0.8.0.zip, r-oldrel: ACNE_0.8.0.zip
OS X Snow Leopard binaries: r-oldrel: ACNE_0.8.0.tgz
OS X Mavericks binaries: r-release: ACNE_0.8.0.tgz
Old sources: ACNE archive