calmate: Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation

A multi-array post-processing method of allele-specific copy-number estimates (ASCNs).

Version: 0.12.1
Depends: R (≥ 3.0.3), R.utils (≥ 2.1.0), aroma.core (≥ 2.14.0)
Imports: utils, MASS, R.methodsS3 (≥ 1.7.0), R.oo (≥ 1.19.0), matrixStats (≥ 0.14.2), R.filesets (≥ 2.9.0)
Suggests: DNAcopy
Published: 2015-10-27
Author: Maria Ortiz [aut, ctb], Ander Aramburu [ctb], Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut, ctb], Angel Rubio [aut, ctb]
Maintainer: Henrik Bengtsson <henrikb at braju.com>
BugReports: https://github.com/HenrikBengtsson/calmate/issues
License: LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2.1)]
URL: https://github.com/HenrikBengtsson/calmate/
NeedsCompilation: no
Materials: NEWS
CRAN checks: calmate results

Downloads:

Reference manual: calmate.pdf
Package source: calmate_0.12.1.tar.gz
Windows binaries: r-devel: calmate_0.12.1.zip, r-release: calmate_0.12.1.zip, r-oldrel: calmate_0.12.1.zip
OS X Mavericks binaries: r-release: calmate_0.12.1.tgz, r-oldrel: calmate_0.12.1.tgz
Old sources: calmate archive