haplo.ccs: Estimate Haplotype Relative Risks in Case-Control Data

'haplo.ccs' estimates haplotype and covariate relative risks in case-control data by weighted logistic regression. Diplotype probabilities, which are estimated by EM computation with progressive insertion of loci, are utilized as weights.

Version: 1.3.1
Depends: R (≥ 2.13.0), haplo.stats, survival
Published: 2012-10-29
Author: Benjamin French and Thomas Lumley
Maintainer: Benjamin French <bcfrench at upenn.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: README
In views: Genetics
CRAN checks: haplo.ccs results

Downloads:

Reference manual: haplo.ccs.pdf
Package source: haplo.ccs_1.3.1.tar.gz
Windows binaries: r-devel: haplo.ccs_1.3.1.zip, r-release: haplo.ccs_1.3.1.zip, r-oldrel: haplo.ccs_1.3.1.zip
OS X Snow Leopard binaries: r-release: haplo.ccs_1.3.1.tgz, r-oldrel: haplo.ccs_1.3.1.tgz
OS X Mavericks binaries: r-release: haplo.ccs_1.3.1.tgz
Old sources: haplo.ccs archive