0.9-8 - fix memory error in teos handler (thanks, B. Ripley) 0.9-7 - make ctdTrim() work in R 3.0 - support for adp vmdas nav data (coded by Clark Richards) - approx3d(): added - drawPalette(): new arg 'fullpage' - plot.lobo(): add 'which' argument - read.coastline.openstreetmap() added - data(levitus) added - plot.coastline(): new arguments 'projection' etc to use mapPlot() - mapContour(): permit first argument to be a 'topo' object - mapPlot(): add arguments axes, bg, fill, and drawBox 0.9-6 - address compilation error on Windows-64 platform - make some long-running operations more interruptible - oceApprox(): permit equal x values [issue 279] 0.9-5 - halve package check time 0.9-4 - as.section() added - add data(endeavour) - add map projections, with provisional functions mapPlot() etc - plot.ctd(): add argument 'add' - add crude mapping support - interpBarnes(): add args 'xgl' and 'ygl' - read.section(): add 'directory' argument - sectionSmooth(): add 'barnes' method - oce.plot.ts() and oce.axis.POSIXct(): add tformat argument - read.aquadopp() and cousins added [issues 253 and 258] - read.ctd() guesses waterDepth if not supplied [issue 253] - plotTS(): extend isopycnal range [issue 252] - plot.section() contouring improved - data(oceans) added - data(papa) added - fillGap() works on matrices as well as vectors - read.lobo() is more flexible on column names - imagep(..., axes=FALSE): no longer plots axis box [issue 249] - oce.plot.ts(): alter time auto-ranging method - oceBisect(): increase generality of function whose root is sought - plotTS(): clean axes after isopycnals drawn - teos10: update test values (with help from PB) - read.adp.nortek(): handle missing 'to' argument as documented - beamUnattenuateAdp() renamed beamUnspreadAdp() - plotTS() and plotProfile(): permit type='n' - plotProfile(ytype='z'): fix bug in y label - improve error message if TEOS-10 is missing 0.9-3 - example(riley): remove error in R-devel - plot.ctd(..., which=7) improvement - swSCTp(): accept conductivity in mS/cm and S/m - as.ctd(): accept TEOS-10 values SA and CT - make TEOS routines more resistant to unphysical values 0.9-2 - remove unwanted files during build process 0.9-1 - pwelch(): fix bug in frequency - tidem(): add argument 'regress' - rename oce.plot.sticks() as plotSticks(); delete stickplot() - use S4 style for all plot() methods - data(giss) added - data(topo2) added - plotPolar() added - oceMagic() new name for magic() - errorBars() added - numberAsPOSIXct() add a leap second for July 2012 0.8-10 - plot.topo(): automatic cut-point shift - add support for Nortek aquadopp-profiler instruments - oceContour() added - lisst class added - plotTaylor() added - oce.as.raw() added - binmap() added 0.8-9 - make the newly-added TEOS-10 functions compile on Windows 0.8-8 - data(cm) added - plot.coastline(): improve argument 'geographical' - add prettyPosition() - add grad() - add (preliminary) support for the TEOS-10 library, which must be installed separately - add integrateTrapezoid() - plotTS(): add argument teos - add teos() as an interface to the TEOS-10 library - add moonAngle() plus several other astronomy-related functions, e.g. julianDay() 0.8-7 - plotInset(): remove 'bg' and 'fg' arguments - plotTS(): add 'bg' argument - rename 'dt' object and functions to 'tdr' - plotTS(): add argument 'inset' - read.adp.rdi(): fix a bug in bottom-tracking; add soundSpeed vector - data(echosounder) created - formatPosition() created - plot(echosounder): new arguments atTop and labelsTop - adp objects now also hold 'percent good' for RDI instruments - plot.drifter(): improve multi-panel plots - imagep(): add argument 'missingColor' - imagep() and drawPalette(): add arguments 'labels' and 'at' 0.8-6 - imagep(): permit POSIXt type for zlim 0.8-5 - reconstruct data(ctd) so plot will focus maps better - plotInset() added - grid() works for oce-based time axes - imagep(..., filledContours): obey ylab argument - subset(): permit subsetting ADP by pressure - oce.plot.ts(): obey arguments xaxt and yaxt - improve support for shapefile coastlines 0.8-4 - replace 'center' argument for plotting topography and coastline with clatitude and clongitude - add 'echosounder' class - fullFilename(): handle URLs properly - ADV objects: add access to slow variables (e.g. headingSlow) 0.8-3 - add 'met' class - subset.oce() handles section objects - draw.section(): permit xtype="latitude" or "longitude" - imagpe() has drawPalette="space" option 0.8-2 - fix bug in read.coastline(), reversing lon and lat [issue162] - fix bug in S4 adp validity checker - geodDist(): add argument 'alongPath' - remove compilation warning about doc for summary.ctd() 0.8-1 - switch to S4 classes, and add new accessors and 'show' functions. - add support for RBR 'rsk' files - plot.section() now uses 'col' if supplied 0.7-1 - improve oceColorsJet() - improve plotProfile() vertical range with missing data - add data(drag) - plotProfile() and plot.ctd(): add xtype="spice" - add data(geosecs235) - plotProfile() and plot.ctd(): add argument 'keepNA' - as.ctd(): add arguments 'other' and 'missingValue' - read.lobo(): tolerate more formats, including missing velocities - add data(schmitt) - add accessor spice() - handle O2 and nutrients in CTD data and sections - swSCTp(): use surface pressure as a default - plotTS(): add arguments inSitu and referencePressure - plotTS(): handle section objects - fix bugs reported in issues 150, 151, 153, 155, 156 - imagep(): change default drawContours to FALSE 0.6-1 - add 'adv' dataset - generalize swN2() by adding new arg 'derivs' - oce.plot.ts() gets new arg 'axes' - add accessor distance() - rename to plotTS() and plotScan() to avoid S3 check warnings - switch makeFilter's argument asKernel to TRUE 0.5-1 - add support for ARGO drifters - latitude() and longitude(): new argument to repeat byDepth - addCtdColumn(): replace if column already exists - add CTD accessors for latitude, longitude, pressure, salinity, temperaure 0.4-1 - plot.sealevel(): only show 3 panels, for clarity - plot.ctd(): add argument 'type' - imagep(): handle x, y, and z as image() does - oce.plot.ts(): inferred ylim matches data range within provided xlim - read.adv.nortek(): handle extra analog data - add CTD accessors longitude(), latitude(), time(), elevation(), etc 0.3-1 - add read.oce.odf() - add findInOrdered - generalize tidem() argument list - read.adv.nortek(): handle burst-mode data - add datasets wilson, redfieldNP, redfieldNC, redfieldPlankton, and riley - change data(ctd) to be derived from data(ctdRaw) - change to monitor=FALSE for all reading functions - add accessor functions heading(), latitude(), longitude(), pitch(), pressure(), processingLog(), roll(), salinity(), temperature(), time(), and velocity(). - rename history as processingLog - flatten all data objects to be 1 level thick (for future matlab exports) - add threenum() added, and use it in all summaries (for speed) 0.2-3 - head.adp() added - tail.adp() added - extract() added 0.2-2 - velocityStatistics() added - new names: oceApprox() integerToAscii() rangeLimit() ctdRaw - topoInterpolate() added - numberAsPOSIXct(): add type 'argos' - rename beamAttenuateAdp() as beamUnattenuateAdp() 0.2-1 - camel-case function and argument names (and, retroactively, this NEWS file) 0.1-83 - add binAverage() - fillGap(): add 'rule' argument (analogous to same for approx()) - add rescale() - read.pt(): fix timing error; use as.pt() to create return value - add as.pt() - read.adp.rdi() uses checksums - number.as.POSIXct(type="gps"): account for leap seconds 0.1-82 - remove warning that occurs for R 2.13.0 (alpha) - number.as.POSIXct(): accept GPS times - rename e.g. adv.2enu() as to.enu.adv() - speed up conversion of ADP and ADV to enu by more than a factor of 10 - change RDI coordinate handling - rename match.bytes() as matchBytes() - add drawpalette() - remove matlab2POSIXt(), now a sub-case of number.as.POSIXct() - number.as.POSIXct(): added - oceBiset(): added - despike(): add argument 'action' - detrend(): added - read.adp.sontek(): handle PCADP type - read.adp.sontek.serial(): added - read.section(): handle WOCE quality flags for salinity - retime(): added - read.adv.sontek.serial(): correct error in class of 'a' and 'c' - despike(): use string value for argument 'method' - logger.toc(): fix bug in discovering files ranging over days - as.ctd(): make temperature and salinity into vectors, if not already - plot.TS(): add argument 'use.smoothScatter' - oceDebug(): flush the console after printing a message - sw.theta(): rename the method possibilities, to be lower case, without dates - in some sw functions, rename 'pref' as 'reference.pressure' - read.ctd(): fix bug in getting start.time for some time formats - pwelch() added - plot.sealevel(): make y axis obey range in data subset, if xlim is given - adp.2enu() added - coastline.world: improve resolution by a factor of 4 or so - read.ctd.woce(): infer water depth as max(pressure) if it's not in the header - section.smooth(): handle misordered stations; handle missing values better - plot.section(): allow strings for 'which'; avoid contouring error if two stations at same distance - plot.ctd() and plot.profile(): add 'use.smoothScatter' argument - coriolis(): improve omega value 0.1-81 - add despike() - add range.limit() - add unabbreviate.time() - add support for bottom-tracking RDI ADCPs - add support for interocean 's4' current meters - add unwrap.angle() - read.adv.nortek(): detect the velocity range - add processing.log.add(), an alternative to processing.log.append() - plot.ctd(): add more plot types (and re-use which=9 for salinity, not density) - as.ctd(): improve flexibilty - predict.tidem(): add 'newdata' argument - adv.2enu() added - adp.xyz2enu(): make it correct for heading.bias - make.filter(): can now produce tskernel type - improve (but temporarily limit) fill.gap - plot.adp(): add 'use.layout' argument - window.oce() added - make objects remember full filename, not just local filename (issue8) - plot.tidem(): remove argument 'plot.type', using 'which' instead - read.pt(): add arguments from, by, and to - fix issue 57 [read.adp.rdi() read the heading incorrectly] - add "reiniger-ross" method to ctd.decimate() - oceApprox() added - topoWorld dataset added - plot.ctd(): by default, make coastlines extend to box boundaries - reformulate sun.angle in R - fix google-code issue 56 [plot.topo() should accept land.z=NULL] - fix google-code issue 55 [plot.topo() could go past poles] - fix google-code issue 54 [plot.topo() was resetting par() on exit] - fix google-code issue 53 [interp.barnes() gives poor error msg for mismatched x and y] - fix google-code issue 52 [plot.section() draws incorrect bottom shape] 0.1-80 - add sun.angle [not tested yet; needs R reformulation] - fix google-code issue 51 [summary.section() does not report water depth] - fix google-code issue 50 [non-bug relating to sun elevation] - fix google-code issue 49 [demo(TS) broken] 0.1-79 - fix google-code issue 48 [oce.plot.sticks() ignored page ratio] - fix google-code issue 47 [cannot read new MEDS sealevel format] 0.1-78 - add data(RRprofile) - to plot.TS(), add arguments lwd.rho and lty.rho 0.1-77 - refactor adp code wrt transformation matrices - add matrix.smooth() - improve labels for oce.axis.POSIXct() - set default for 'debug' argument to getOption("oceDebug") in all functions - plot.profile(): add argument ytype; change 'type' to 'xtype' - add swZ() - add oceSmooth() - add read.adv(), etc., supporting Nortek and Sontek devices - add read.adp(), etc., supporting Nortek, RDI and Sontek devices - add oce.plot.ts() - add imagep() - add bcd2integer() - add matlab2POSIXt() - to most plot functions, add 'mgp' and 'mar' arguments - plot.pt(): add plim and Tlim arguments - gravity(): give default for latitude argument - plot.sealevel(): remove argument focus.time and add argument which - rename tdr functions as pt, to reflect oral convention - add geod.xy() - add argument 'mgp' to all plotting functions - use abbreviations for axis names if space is tight - add argument 'adorn' to all plot() functions - add oceColorsTwo(), oceColorsJet(), and oceColorsPalette() - add byte2binary() - add "lty.grid" to all CTD plotting functions - add "+.section", a more convenient way to build sections from stations - rework summary() for all existing objects - as.sealevel(): rename sampling.interval as deltat 0.1-76 - sw.N2(): make it tolerate NAs; adjust df to make result smoother - add makeFilter() - add decimate(), which may eventually replace ctd.decimate() - read.tdr(): handle 5-column data files; add tz argument - plot.profile(): add types sigma+dpdt and sigma+time - ctdTrim(): add pmin parameter - plot.ctd(): add Slim, Tlim, plim, lonlim, latlim arguments; add ability to draw maps - add coastline.sle dataset - plot.TS(): fix isopycnal labels for fresh water; add Slim and Tlim arguments - read.ctd(): make it understand another SBE format - add parseLatlon() - oceEdit(): add argument 'action' - add oce.write.table() - add fillGap() 0.1-75 - add addColumn() - add undriftTime() - add tdrPatm() - make readTdr() gather serial no. info; show this on plot.pt() - switch to recommended verion-number format - remove section.subset(), replaced by subset() - improve log items in functions that read and assemble oce objects http://code.google.com/p/r-oce/issues/detail?id=38 - add subset.oce() - add header() - add argument 'which' to read.rbrdtr() - make read.rbrdtr() understand headers better - add arguments 'xtype' and 'ytype' to plot.section() - improve accuracy of bottom drawn by plot.section() - add section.smooth() - fix bug making section.smooth() fail if fewer than 4 good data at any given level http://code.google.com/p/r-oce/issues/detail?id=36 - fix bug making summary.ctd() fail for stations within sections made by section.smooth() http://code.google.com/p/r-oce/issues/detail?id=34 - fix bug making sw.dynamic.height() choke on empty stations http://code.google.com/p/r-oce/issues/detail?id=33 - fix bug making plot.section() die if x is unordered http://code.google.com/p/r-oce/issues/detail?id=36 - rename rbrpt functions to tdr functions, improving generality 0.1.74 - add argument "src" to as.ctd() http://code.google.com/p/r-oce/issues/detail?id=22 - plot.section() RHS axis needs tics http://code.google.com/p/r-oce/issues/detail?id=32 - trim axis whitespace in plot.profile() and plot.TS() http://code.google.com/p/r-oce/issues/detail?id=31 - make read.oce() understand WOCE section type http://code.google.com/p/r-oce/issues/detail?id=30 - speed up swSpice() http://code.google.com/p/r-oce/issues/detail?id=29 - add read.pt(), summary.pt(), plot.pt(), and ptTrim() - make plot.TS() isopycnal label size be same on top and right sides http://code.google.com/p/r-oce/issues/detail?id=26 - add lwd argument to plot.profile() - give plot.section() ability to control contour levels and labels - give plot.section() tics for station-location 0.1.73 - plot.topo() narrows autoscale to xlim-ylim region, if provided - add plot.ctd() 'textpanel' option, and put the profiles in the same row - fix bug in plot.profile() to let it take Slim,..., as args http://code.google.com/p/r-oce/issues/detail?id=25 - fix bug in plot.profile() font size http://code.google.com/p/r-oce/issues/detail?id=24 - fix bug in plot.profile(type="S_T") positioning http://code.google.com/p/r-oce/issues/detail?id=23 - fix bug in section plot (bottom was missing) http://code.google.com/p/r-oce/issues/detail?id=21 - fix bug in size of salinity axis label for plot.ctd() - use pch=21 for TS plots (so data density is more visible) 0.1.72 - add interp.barnes() 0.1.71 - fix bug in makeSection (ignored the list, if a list provided) http://code.google.com/p/r-oce/issues/detail?id=18&q=label:Type-Defect - add oce.edit(), later renamed oceEdit() - add topoMaritimes dataset - add read.topo(), plot.topo(), and summary.topo() - add gebcoColors() ... renamed oceColorsGebco() in version 0.1.77 - make plot.section() check that pressures coincide 0.1.70 - plot.TS(): make isopycnal list work better for nearly-fresh water - trimCtd(): improve equilibration-phase deletion by piecewise-linear regression - read.ctd(): handle cases without cruise information or scan column - permit setting xlab and ylab in plot.TS() - make processing log timestamps be in GMT - add as.windrose() and plot.windrose() - add sealevel.tuk sea-level dataset - add tidem(), predict.tide(), summary.tide(), plot.tide(), and data(tidedata) - establish a uniform form for objects created by "read" and "as" - let swRho() and similar sw. functions take a ctd object as a single argument - add swDynamicHeight() - make section.grid() and ctd.decimate() extrapolate to surface in "approx" method - add summary.oce() - make all objects inherit from a new class "oce" - fix google-code issue 12: read.sealevel() had a hard-wired filename (remnant from debugging) [http://code.google.com/p/r-oce/issues/detail?id=12&can=1&q=label:Type-Defect] 0.1.69 - modify documentation slightly - start a migration to more uniform object structures - rename as.CTD() to as.ctd(), to make it consistent with similar functions - add read.section() - add sectionGrid(), which only grids in p at the moment - add a03 dataset - fix SF bug 1833719: warnings from read.ctd() - fix google-code issue 8: read.coastline() not producing data [http://code.google.com/p/r-oce/issues/detail?id=8&can=1&q=label:Type-Defect] - improve ability of trimCtd() to ignore spurious initial data - add "connectPoints" option to plot.TS() - add "station" item to "ctd" object - change as.CTD() to produce sigma.theta instead of sigma 0.1.68 - add coastline.world dataset, and increase resolution of coastline.maritimes - plot.TS() no longer rotates the RH margin isopycnal labels (unless told to) 0.1.67 - allow swRho() and similar routines take matrices as arguments for S, t, etc 0.1.66 - fix bug in plot.TS() that prevented it from showing some isopycnals if min(S)=0 0.1.65 - switch to using UNESCO formulation for sw potential temperature by default - prevent warnings with C90 compiler on some machines 0.1.64 - add read.oce(), a generic function for reading several oceanographic files - make read.ctd() understand WOCE-exchange files - make read.sealevel() understand comma-separated data from MEDS - make plot.sealevel() skip the spectral graphs, if the timeseries has NA values - improve aesthetics of plot.ctd() - extend plot.sealevel() by adding focus.time argument - add ctdDecimate() - add oce.as.POSIXlt() - add latlonFormat(), latFormat(), and lonFormat() - add as.coastline() - add make.section() - add summary.section() - add plot.section() - add data(section) 0.1.63 - add swSoundSpeed() 0.1.62 - add historyAppend() (later named processingLogAppend()) and related code - improve ctdTrim() 0.1.61 - add rudimentary read/summary/plot functions for lobo datasets 0.1.60 - add vignette; address some build-stage warning messages 0.1.59 - set up data files to permit latin1 encoding of some content 0.1.58 - rename all seawater-related functions to e.g. swTheta(), to allow for atmospheric analogs 0.1.57 - make as.CTD() accept length(p)=1, e.g. for surface plots 0.1.56 - make read.coastline() handle S files 0.1.55 - keep swTheta() from complaining if length(p) = 1 0.1.54 - add swAlpha() and swBeta() 0.1.53 - add swAlphaOverBeta() 0.1.52 - document the use of df in swN2(), plot.ctd(), etc. 0.1.51 - permit swRho() (and similar) to take NAs in args (bug B32) 0.1.50 - permit swRho() and descendants to take scalar pressure. 0.1.49 - add as.CTD() 0.1.48 - add "UNESCO1983" formulation to swTheta() as an alternative 0.1.47 - speed up swTheta() by moving vector work from R to C 0.1.46 - make geodDist() accept a vector for location 1 and a scalar for location 2 0.1.45 - make read.coastline() understand matlab and Splus formats 0.1.44 - make plot.coastline() scale lat and lon correctly 0.1.43 - add read.coastline(), summary.coastline(), and plot.coastline() 0.1.42 - add as.sealevel() 0.1.41 - add read.sealevel(), summary.sealevel(), and plot.sealevel() 0.1.40 - add name option to plot.ctd.scan() 0.1.39 - add lapse.rate() 0.1.38 - fix B27 (header not updated for columns added during read.ctd) 0.1.37 - rename as ctdTrim() - rename to ctdWrite() 0.1.36 - add write.ctd() - add ctdAddColumn() - add ctdUpdateHeader() 0.1.35 - add plot.ctd.scan() 0.1.34 - make read.ctd() calculate S if missing but C, T, and p are given - add swSCTp() 0.1.33 - add swConductivity() 0.1.32 - rename to swRho() 0.1.31 - use namespace 0.1.30 - add oce.viscosity() 0.1.29 - fix B23 (not done yet) - fix B22 (not done within oce; done at system level) 0.1.28 - add pressure method to trimCtd() 0.1.27 - vectorize swRho() since it was too slow on large datasets 0.1.26 - make demo(oce.ctd) print data 0.1.25 - fix some documentation errors that the 2.0.0 CHECK noticed 0.1.24 - profiles have correct y-axis - OSX port, but must first do e.g. export PKG_LIBS="-L/sw/lib" 0.1.23 - OSX port (you must first do export PKG_LIBS="-L/sw/lib") 0.1.22 - add trim.ctd() 0.1.21 - permit lat/lon with the "N"-type indicator at start 0.1.20 - fix bug B16 (label the isopycnals on TS diagram) 0.1.19 - make read.ctd handle more file types 0.1.18 - add oceCoriolis, oceDepth, oceGravity, oceTFreeze 0.1.17 - add oceSpecificHeat oce.N2; fix bug B18 0.1.16 - get data(ctd) working 0.1.15 - add oceSTRho 0.1.14 - fix bug B15 (maybe) 0.1.13 - add oceTSRho 0.1.12 - fix bugs B10, B11, and B13 0.1.11 - fix bugs B6, B7, and B12 0.1.10 - add geodDist() - add plot.ctd(), which is rudimentary for now - fix bug B8 0.1.9 - add spice() function 0.1.8 - permit all eos functions to handle missing values - fix bug B4 0.1.7 - add summary(ctd) method. - make read.ctd() return an object of type ctd. - get tests/ working. 0.1.6 - create tests/oce.test1.R 0.1.5 - add oceSigma(), oceSigmaT(), oceSigmaTheta() 0.1.4 - permit various EOS functions to handle lists - fix bug B3 0.1.3 - add ocerho() 0.1.2 - fix file-path bug - fix bug B2 0.1.1 - add theta() - fix bug B1 0.1.0 - add read.ctd()