RTFBS identifies and scores possible Transcription Factor
Binding Sites and allows for FDR analysis and pruning. It
supports splitting of sequences based on size or a specified
GFF, grouping by GC content, and specification of Markov model
order. The heavy lifting is done in C while all results are
made available via R.
| Version: |
0.2 |
| Depends: |
stats, rphast |
| Published: |
2012-03-30 |
| Author: |
Nicholas Peterson, Andre Martins, Melissa Hubisz, and Adam
Siepel |
| Maintainer: |
Melissa Hubisz <mjhubisz at cornell.edu> |
| License: |
BSD |
| Copyright: |
The code in src/pcre is Copyright (c) 1997-2010 University
of Cambridge. All other code is Copyright (c) 2002-2011
University of California, Cornell University. |
| URL: |
http://compgen.bscb.cornell.edu/rtfbs |
| NeedsCompilation: |
yes |
| CRAN checks: |
rtfbs results |