CRAN Package Check Results for Package bulkAnalyseR

Last updated on 2024-07-17 20:56:56 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 15.81 172.19 188.00 OK
r-devel-linux-x86_64-debian-gcc 1.1.0 10.93 125.06 135.99 OK
r-devel-linux-x86_64-fedora-clang 1.1.0 231.17 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.0 238.95 OK
r-devel-windows-x86_64 1.1.0 12.00 152.00 164.00 NOTE
r-patched-linux-x86_64 1.1.0 9.61 163.20 172.81 OK
r-release-linux-x86_64 1.1.0 7.68 159.77 167.45 OK
r-release-macos-arm64 1.1.0 69.00 ERROR
r-release-macos-x86_64 1.1.0 105.00 NOTE
r-release-windows-x86_64 1.1.0 12.00 154.00 166.00 NOTE
r-oldrel-macos-arm64 1.1.0 7.00 ERROR
r-oldrel-macos-x86_64 1.1.0 151.00 NOTE
r-oldrel-windows-x86_64 1.1.0 16.00 190.00 206.00 NOTE

Additional issues

noSuggests

Check Details

Version: 1.1.0
Check: package dependencies
Result: NOTE Imports includes 32 non-default packages. Importing from so many packages makes the package vulnerable to any of them becoming unavailable. Move as many as possible to Suggests and use conditionally. Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1.0
Check: installed package size
Result: NOTE installed size is 6.2Mb sub-directories of 1Mb or more: doc 2.3Mb extdata 3.4Mb Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.1.0
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘org.Mm.eg.db’ Flavors: r-release-macos-arm64, r-oldrel-macos-x86_64

Version: 1.1.0
Check: examples
Result: ERROR Running examples in ‘bulkAnalyseR-Ex.R’ failed The error most likely occurred in: > ### Name: DEanalysis > ### Title: Perform differential expression (DE) analysis on an expression > ### matrix > ### Aliases: DEanalysis DEanalysis_edger DEanalysis_deseq2 > > ### ** Examples > > expression.matrix.preproc <- as.matrix(read.csv( + system.file("extdata", "expression_matrix_preprocessed.csv", package = "bulkAnalyseR"), + row.names = 1 + ))[1:100, 1:4] > > anno <- AnnotationDbi::select( + getExportedValue('org.Mm.eg.db', 'org.Mm.eg.db'), + keys = rownames(expression.matrix.preproc), + keytype = 'ENSEMBL', + columns = 'SYMBOL' + ) %>% + dplyr::distinct(ENSEMBL, .keep_all = TRUE) %>% + dplyr::mutate(NAME = ifelse(is.na(SYMBOL), ENSEMBL, SYMBOL)) Error in (function (cond) : error in evaluating the argument 'x' in selecting a method for function 'select': there is no package called ‘org.Mm.eg.db’ Calls: %>% ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Flavor: r-release-macos-arm64

Version: 1.1.0
Check: package dependencies
Result: ERROR Package required but not available: ‘GENIE3’ Package suggested but not available for checking: ‘org.Mm.eg.db’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-oldrel-macos-arm64