msig: An R Package for Exploring Molecular Signatures Database

The Molecular Signatures Database ('MSigDB') is one of the most widely used and comprehensive databases of gene sets for performing gene set enrichment analysis <doi:10.1016/j.cels.2015.12.004>. The 'msig' package provides you with powerful, easy-to-use and flexible query functions for the 'MsigDB' database. There are 2 query modes in the 'msig' package: online query and local query. Both queries contain 2 steps: gene set name and gene. The online search is divided into 2 modes: registered search and non-registered browse. For registered search, email that you registered should be provided. Local queries can be made from local database, which can be updated by msig_update() function.

Version: 1.0
Depends: R (≥ 4.1.0)
Imports: do, rvest, xml2, set, plyr, httr, jsonlite, utils, kableExtra, tmcn, crayon, dplyr, stringr, sqldf
Published: 2021-06-29
DOI: 10.32614/CRAN.package.msig
Author: Jing Zhang [aut, cre], Zhi Jin [aut]
Maintainer: Jing Zhang <zj391120 at>
License: GPL-2
NeedsCompilation: no
CRAN checks: msig results


Reference manual: msig.pdf


Package source: msig_1.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): msig_1.0.tgz, r-oldrel (arm64): msig_1.0.tgz, r-release (x86_64): msig_1.0.tgz, r-oldrel (x86_64): msig_1.0.tgz


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