rworkflows package versioning with
rworkflows action Release versioning.use_vignette_docker/use_vignette_getstarted
package arg if not provided.construct_cont, as not
everyone will have rworkfows installed on the machine where
the vignette is being rendered.gha_python_versions() within
construct_runnersminiforge_variantminiforge_versionactivate_environmentenvironment_filechannelsconstruct_conda_ymlconstruct_conda_yml and building
conda envs from the generated yamls.fill_yaml
is_defaultforce=TRUE to the
remotes::install_local steps. #86runforesight/workflow-telemetry-action step.rspm explicitly by default.construct_cont:
default_registrycheck_registrydocker_registry arg to let users choose which
registry to push to. Defaults to “ghcr.io” instead of “docker.io” so
that no additional credentials are needed.
use_workflowget_github_url_desc
free_diskspace
use_workflowuse_workflow
template arg can now be “rworkflows_static:dev” to use
the “dev” branch’s version of action.yml as a workflow
template.use_vignette_docker
infer_docker_orgno visible global function definition for internal function check_miniconda_args
check_miniconda_args was clearly defined in its
own file. The only way to fix it was copying the function into the same
one where it was called fill_yaml.echo "GITHUB_TOKEN=${{ inputs.GITHUB_TOKEN }}" >> $GITHUB_ENVrunforesight/workflow-telemetry-action step and
move to top.infer_deps
infer_deps the DESCRIPTION path directly
within the fill_description func.conda_*
setup-miniconda.use_codespace
run_vignettes.tinytex_installer,
tinytex_version, pandoc_versiontinytex R package.construct_runners
bioc is of length one, the same value
is automatically applied across all 3 OS.use_workflow
name arg into two args: name +
template, so that you can create multiple separate workflow
files using the same template.tinytex_installer,
tinytex_version, pandoc_versionsave_yamlcheck_bioc_versioncheck_r_versionconstruct_contBiocPkgTools + biocViews to
Suggests
fill_yaml
omit_if_default to omit tinytex args
from yaml.is_rstudio: new interal helper function.github_token parameter docs between
action.yml and use_workflow.BiocPkgTools/biocViews to
Suggests to compensate for issues with the CRAN server: #65fill_yaml:
template="rworkflows_static", prevent
with2 from simplifying to vector.construct_runners
rspm wasn’t getting added.get_github_url_db
docs size by rendering PNG instead of html in
depgraph vignette.get_hex and get_description
get_description
use_repos arg.@returns in
Roxygen notes.action.yml
repos
before it was defined.bibentry for CITATION.To compensate for this had to modify
test-bioc_r_versions.
use_workflow
branch to align
with Bioc’s
recent changes to their standards.get_description unit tests.construct_authors unit tests.infer_biocviews tests.codecov_graphs: Fix link with redirect.timeout arg to R package installation steps
too.AnVIL usage, as the URLs are now
deprecated and BiocManager uses the pre-compiled binaries
by default.get_description
description obj directly to any argument
returns that obj.refs at onceget_hex
output style arg to vignette functions.use_vignette_docker
port_in and port_outport_out=8900 to align with the available
Imperial Private Cloud ports (8900-9000).fill_descriptioninfer_depsinfer_biocviewsis_ghaBiocCheck in rworkflow yamls.require() calls in action.yml
quiet.use_badges
add_codecov_graphscodecov_graphsbioc_r_version:
depth and internal func
parse_versionget_hex / use_badges
add_hex is a character string, interpret it as the
hex path instead.use_badges
add_lifecycle:
badger::badge_lifecycle()biocViews: WorkflowManagementget_hex: Remove extra breaksif statements when
rworkflows_static gets saved.is_default as it is never used. Document in gist
for later use:
https://gist.github.com/bschilder/f02a5b564977f52fd665728a22c0d005use_badges:
pkg arg for explicit package
specification.get_descriptionuse_badges:
ref and pkg explicitly in relevant
functions to avoid inference.r-lib/setup-r-dependenciesr-lib/setup-tinytexgrimbough/bioc-actions/setup-bioctimeoutr-lib/setup-r-dependencies
node_modules$package-lock\.json$package\.json$no-check-CRAN arg to BiocCheck step to
allow using bioc checks for packages already on CRAN.get_hex in cases where multiple links in
DESCRIPTION URL.use_issue_templatervestUpSetRgithubinstallBiocManagerbioc_r_versionsconstruct_runnersrcmdcheck \link with
\hrefuse_badges: remove unnecessary ref
arg.has_latex
use_workflowrworkflow action.add_badges
use_readmeuse_vignette_dockeruse_vignettte_getstarted|> was introduced.badger a Importvignette field in use_vignette_*
functions.run_crancheck –> run_rcmdcheckDOCKER_ORG –> docker_orgDOCKER_USERNAME –> docker_useras_cran: separate from run_rcmdchecktag: specify action version.use_workflow(run_docker=FALSE)repositorybadgeNEWS.md file to track changes to the
package.