shinyExprPortal: A Configurable 'shiny' Portal for Sharing Analysis of Molecular Expression Data

Enables deploying configuration file-based 'shiny' apps with minimal programming for interactive exploration and analysis showcase of molecular expression data. For exploration, supports visualization of correlations between rows of an expression matrix and a table of observations, such as clinical measures, and comparison of changes in expression over time. For showcase, enables visualizing the results of differential expression from package such as 'limma', co-expression modules from 'WGCNA' and lower dimensional projections.

Version: 1.1.0
Depends: R (≥ 3.5.0)
Imports: config, stats, utils, shiny, htmltools, markdown, cli, dplyr, tidyr, yaml, data.table, bslib, iheatmapr, vegawidget, DT, qvalue, parallel, Rfast, rlang, shinyhelper
Suggests: testthat (≥ 3.0.0), whisker, knitr, rmarkdown, r2d3, kableExtra, RColorBrewer
Published: 2024-02-06
Author: Rafael Henkin ORCID iD [cre, aut, cph]
Maintainer: Rafael Henkin <r.henkin at qmul.ac.uk>
BugReports: https://github.com/C4TB/shinyExprPortal/issues
License: MIT + file LICENSE
URL: https://c4tb.github.io/shinyExprPortal/, https://github.com/C4TB/shinyExprPortal
NeedsCompilation: no
Materials: README NEWS
CRAN checks: shinyExprPortal results

Documentation:

Reference manual: shinyExprPortal.pdf
Vignettes: Full Configuration Guide
Portal UI and Code Customization
Data Preparation Guide
Quick Start Guide for shinyExprPortal

Downloads:

Package source: shinyExprPortal_1.1.0.tar.gz
Windows binaries: r-devel: shinyExprPortal_1.1.0.zip, r-release: shinyExprPortal_1.1.0.zip, r-oldrel: shinyExprPortal_1.1.0.zip
macOS binaries: r-release (arm64): shinyExprPortal_1.1.0.tgz, r-oldrel (arm64): shinyExprPortal_1.1.0.tgz, r-release (x86_64): shinyExprPortal_1.1.0.tgz
Old sources: shinyExprPortal archive

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